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Table 2 DEGs in four representative overlapped pathways and transcription in AMY

From: Region- and time-dependent gene regulation in the amygdala and anterior cingulate cortex of a PTSD-like mouse model

 

2 weeks only

2 and 5 weeks

5 weeks only

Glutamatergic synapse

ADCY3, ADCY6, GLS2, GLUL, GRIK3, GRIK4, GRM4, ITPR3, SHANK2

PLCB4, MAPK1

ADCY5, ADCY7, GNG4, GRM7, PRKACB, SLC17A6, SLC1A6, SLC38A1, ADCY1, ADCY8, DLGAP1, GNG5, GRIK5, HOMER2, MAPK3, PRKCG, SLC17A7

Ras signaling

FGFR2, FGFR3, FGF16, MET, HGF, FOXO4, RALGDS, BRAP, KSR2, RASGRP3, PLCG1, VEGFA, RASA3, ABL1, KSR1

MAPK1, KITL, FGF22

PDGFB, MRAS, ELK1, FGF13, PRKCG, PTPN11, IGF1R, HTR7, RASSF1, MAPK3, RASGRP2, RIN1, PRKACB, PLA2G3, FGF1, GNG4, GNG5, CALM1

Axon guidance

PLXNA1, LIMK1, PLXNB1, PLXNB3, MET, EPHB2, SEMA5B, UNC5B, SEMA3G, SEMA4D, ABL1

EPHB1, SEMA3F, MAPK1

NTNG2, CXCL12, SLIT3, PTK2, SEMA6D, UNC5A, EPHA8, NCK1, MAPK3, ROBO3, NFATC2, SRGAP1, SEMA4A

Endocytosis

FGFR2, ARFGAP2, FGFR3, ERBB3, KIF5A, MET, ASAP2, ARPC5, LDLRAP1, RAB7, AMPH, RAB11FIP4, RAB11FIP5, ZFYVE27, ARRB1, FOLR1, GIT2, H2-T24, SMURF1, AGAP1, IQSEC1, MVB12B

IQSEC3

PARD3, RET, USP8, PSD3, PIP5K1C, SMAD3, VPS37C, CYTH2, CAPZB, SRC, CHMP2B, IGF1R, CHMP1A, FAM21, HSPA2, NTRK1, ACAP2, SPG20, PARD6G, EPN1, IQSEC2

Regulation of actin cytoskeleton

FGFR2, FGFR3, SSH1, LIMK1, PPP1R12B, WASF2, FGF16, GNA12, ITGB4, ARPC5, VAV2, PFN4, ITGA7, FGD3

FGF22, MAPK1, WASF1

PDGFB, ACTN4, MRAS, MYLK3, ITGA11, PIP5K1C, FGF13, ITGA4, SRC, INSRR, ITGA9, PTK2, CHRM3, ITGAV, ITGA8, ARAF, MAPK3, FGF1

Transcription GO:0006351

ARNT2, FOXO3, FOXO4, ZIC2, ZGPAT, ZFP932, OLIG3, PPP1R1B, CREB3L2, ZFP687, ZFP276, SATB1, MED12, ZFP629, ZHX3, RRP8, TRERF1, ZFP592, ASCC2, KDM2A, ARRB1, FLII, VGLL4, MYBBP1A, TSHZ2, LITAF, SETD1B, SOX4, TRRAP, SOX8, XAB2, CASZ1, NKX3–1, MTERF2, TCF25, HIP1, MAFG, DNMT3A, IKZF4, TAF3, BHLHE22, SMAD7, TAF8, CREBBP, FOXP2, SREBF2, SAFB2, HDAC4, NOTCH1, SMARCC2, DNMT1, HIVEP1, KAT6B, ADAR, FOXK1, HR, LBH, SUPT5, KDM5C, FOXJ2, SNAPC1, SNAPC4, TLE3, SPEN, MXD4, EYA4, HIPK2, ERN1, MYRF, CUX2, KMT2D, KMT2A, KMT2B, GON4L, MLF1, MINA, ZKSCAN17, SAFB, BCL11B, PRDM11, POU2F2, POU3F3, GATAD2B, POU3F2, BCL6, POU3F1, GTF3C1, CHD5, ZFP526, BRD2, L3MBTL1, PHF12, AFF1, SAP30BP, NKAPL, MEF2D, RPAP1, HNRNPUL1, THRAP3, KDM4B, MAMLD1, ZFP536

AKIRIN2, ATMIN, ARID3B, FOXQ1, JADE1, IL33, MXD1, MAPK1, ZFP740

MEF2C, THRA, PRR13, STAT5B, CBX4, MED25, ASCC1, CBX2, CBX6, RCBTB1, ZFP92, EPC1, SMARCD3, RARB, ZFP503, MAP 2 K6, MAGEL2, BEND6, ZHX2, SIX3, RXRG, SKOR1, GTF2IRD1, MAPK3, ZFP697, TFAP2C, CAMTA2, HMGB3, ELK1, MEIS1, TAL1, VDR, TRP53BP1, MEIS2, HEXIM2, DRAP1, LHX2, TCF4, SLC30A9, NAT14, RFX5, KLF13, TAF7, PTPN14, NR4A2, SMAD3, NR4A1, FEZF2, ZFHX4, PHF1, DLX5, EBF1, HOPX, HABP4, RFX3, ZFHX3, CREBRF, PAX6, ZEB1, ZFP641, KCNIP3, ARHGAP22, DYNLL1, YAP1, HSF4, BHLHE41, THRSP, INO80C, ZCCHC12, TBL1XR1, KHDRBS3, SSBP2, POLR1D, RUNX1T1, GTF2H5, GTF2B, NRIP2, MYT1L, CCND1, EYA1, CHMP1A, PIH1D1, HIPK2, CUX1, PEG3, THAP7, SEC14L2, ZBTB18, TSPYL2, ZFP664, GBX1, PER3, ZFP521, NFATC2, CHD6, ETV4, MAF, ZFP57, MNAT1, DBP, DACH2, HEYL, NEUROD2, NEUROD1, SP8, TBL1X, SP9, PBX3