L1 (Tagging SNP) | IAF of L1 based on PCR | p value based on PCR genotypes | r2,D’ | IAF of L1 based on SNP | p value based on SNP genotypes | ||
---|---|---|---|---|---|---|---|
L1_chr2_q24.1 (rs7594648) | Controls (243) | 0.30 | 0.67 | 0.95,0.98 | Controls (386) | 0.32 | 0.38 |
SALS (220) | 0.29 | SALS (1331) | 0.30 | ||||
L1_chr6_q24.1 (rs1150602) | Controls (494) | 0.14 | 0.32 | 0.90,1.00 | Controls (340) | 0.17 | 0.36 |
SALS (445) | 0.16 | SALS (1178) | 0.18 | ||||
L1_chr6_p22.3 (rs6932875) | Controls (180) | 0.14 | 0.39 | 0.90,0.97 | Controls (357) | 0.16 | 0.99 |
SALS (179) | 0.12 | SALS (1227) | 0.15 | ||||
L1_chr8_q24.22 (rs7844570) | Controls (176) | 0.45 | 0.66 | 0.99,1.00 | Controls (385) | 0.46 | 0.34 |
SALS (177) | 0.44 | SALS (1330) | 0.44 | ||||
L1_chrX_p22.2 (rs6640825) | Female controls (114) | 0.57 | 0.31 | 0.94,0.99 | Female controls (233) | 0.59 | 0.56 |
Female SALS (54) | 0.51 | Female SALS (509) | 0.57 | ||||
Male controls (64) | 0.56 | Male controls (139) | 0.58 | ||||
Male SALS (119) | 0.55 | Male SALS (740) | 0.60 |