- Open Access
A critical role for STIM1 in filopodial calcium entry and axon guidance
Molecular Brain volume 6, Article number: 51 (2013)
Stromal interaction molecule 1 (STIM1), a Ca2+ sensor in the endoplasmic reticulum, regulates store-operated Ca2+ entry (SOCE) that is essential for Ca2+ homeostasis in many types of cells. However, if and how STIM1 and SOCE function in nerve growth cones during axon guidance remains to be elucidated.
We report that STIM1 and transient receptor potential channel 1 (TRPC1)-dependent SOCE operates in Xenopus spinal growth cones to regulate Ca2+ signaling and guidance responses. We found that STIM1 works together with TRPC1 to mediate SOCE within growth cones and filopodia. In particular, STIM1/TRPC1-dependent SOCE was found to mediate oscillatory filopodial Ca2+ transients in the growth cone. Disruption of STIM1 function abolished filopodial Ca2+ transients and impaired Ca2+-dependent attractive responses of Xenopus growth cones to netrin-1. Finally, interference with STIM1 function was found to disrupt midline axon guidance of commissural interneurons in the developing Xenopus spinal cord in vivo.
Our data demonstrate that STIM1/TRPC1-dependent SOCE plays an essential role in generating spatiotemporal Ca2+ signals that mediate guidance responses of nerve growth cones.
Guided axonal growth and regeneration depend on the motile growth cone at the tip of axons to extend and navigate through a complex environment to reach specific targets for neuronal connections. It is well established that the nerve growth cone needs to maintain an optimal range of intracellular Ca2+ concentration ([Ca2+]i) for its motility and responses to extracellular cues . The cytoplasmic Ca2+ homeostasis is regulated by Ca2+ entry from the extracellular environment, internal Ca2+ release and replenishment of the intracellular store [2, 3]. However, how neuronal growth cones coordinate guidance cue-induced Ca2+ influx, internal Ca2+ release and Ca2+ store replenishment to maintain proper guidance behaviors is unknown. Store-operated Ca2+ entry (SOCE) was originally characterized in non-excitable cells as an indispensable Ca2+ influx mechanism to replenish internal stores [2, 3]. It is triggered by Ca2+ depletion from ER through the ER Ca2+ sensor protein, stromal interacting molecule 1 (STIM1). In response to Ca2+ depletion, STIM1 oligomerizes and translocates to ER and plasma membrane junctions, where it interacts with and activates store-operated Ca2+ (SOC) channels that include TRPC1 and Orai1 proteins [2, 3].
In the nervous system, SOCE has been seen to exist in a number of cell types [4–7] and implicated in synaptic plasticity, axon branching, neuropathic pain and fly motor circuit function [6–10]. However, the existence of SOCE and STIM1, and their potential contribution to the intracellular Ca2+ homeostasis and signaling in axon guidance is not well established. Axonal growth cones are highlighted by two types of actin-based motile membrane protrusions, filopodia and lamellipodia . Of these two structures, lamellipodia are considered to be responsible for growth cone locomotion, whereas filopodia are believed to function in sensing of the environment during axon pathfinding [11–13]. Interestingly, rapid Ca2+ transients in growth cone filopodia have been shown to be involved in growth cone responses to extracellular cues [14, 15]. But how Ca2+ signals are generated in filopodia and whether SOCE is involved in this process remain unknown. Here we report that SOCE operates in Xenopus spinal growth cones and depends on STIM1 and TRPC1. Importantly, we find that SOCE mediates spontaneous and netrin-1-potentiated filopodial Ca2+ entries within growth cones. We further provide evidence that STIM1- and TRPC1-dependent SOCE is required for attractive guidance responses of growth cones to netrin-1. Finally, we show that STIM1 is required for midline axon guidance of commissural interneurons in the developing Xenopus spinal cord in vivo. Our data suggest that SOCE is an essential component of intracellular Ca2+ homeostasis and signaling that regulate neuronal growth cone guidance.
Cloning and expression of Xenopus STIM1
We first cloned Xenopus STIM1 (XSTIM1; 668 a.a.), which exhibited 72.8% identity to human STIM1 (685 a.a.; Additional file 1: Figure S1). Whole-mount in situ hybridization of developing Xenopus embryos showed that STIM1 is highly expressed in the dorsal part of the developing embryo, including the neural tube at stages when active axon guidance occurs (Figure 1A, top panels). Coronal sections of Xenopus embryos confirmed the expression of STIM1 mRNA in the neural tube, as well as in the notochord and somites (Figure 1A, bottom panels). RT-PCR analysis from dissected tissues further confirmed that XSTIM1 mRNA is expressed in neural tube and notochord of early tailbud Xenopus embryos (Figure 1B). Immunofluorescence analysis using anti-STIM1 antibody and fluorescent phalloidin to stain F-actin showed that STIM1 protein is ubiquitously distributed in Xenopus spinal neuron, including soma, neurites and growth cones (Figure 1C). Robust expression of XSTIM1 throughout the growth cone and in filopodia is better seen at higher magnifications (Figure 1D). These results show that Xenopus STIM1 is expressed in developing neural tissues and neuronal growth cones of developing axons.
STIM1- and TRPC1-dependent SOCE in Xenopus neuronal growth cones
To study the function of STIM1 in growth cones, we generated wild-type (XSTIM1-WT) and two mutant forms of XSTIM1: a dominant negative form (DN, XSTIM1-D65A-ΔCT) and a constitutively active form (CA, XSTIM1-CT) (Figure 2A) based on previous studies of mammalian STIM1 mutants . We first examined whether STIM1-dependent SOCE operates in neuronal growth cones by Ca2+ imaging analysis using fluo-4 calcium indicator. Xenopus neurons were first bathed in Ca2+-free media with cyclopiazonic acid (CPA; 25 μM), an endoplasmic reticulum Ca2+ pump inhibitor, to deplete intracellular Ca2+ stores. Subsequent addition of extracellular Ca2+ induced a marked and rapid rise in the intracellular Ca2+ concentration ([Ca2+]i) in the growth cone (Figure 2B and C), suggesting the presence of functional SOCE in neuronal growth cones [4–7]. Importantly, we found that the SOCE was largely abolished in growth cones expressing either dominant negative Xenopus STIM1 (XSTIM1-DN, Figure 2B and 2C) or dominant negative human STIM1 (hSTIM1-DN) (Figure 2C), indicating that the elevation in [Ca2+]i requires the function of STIM1. In addition, knock-down of TRPC1 channels by morpholino oligonucleotides against XTRPC1 (XTRPC1-MO) abolished SOCE (Figure 2D). Therefore, TRPC1 is also an essential component of store-operated Ca2+ (SOC) channel complex as suggested by previous studies in saliva gland cells . These results show that store-operated Ca2+ entry operates in neuronal growth cones and requires STIM1 and TRPC1.
STIM1-dependent SOCE mediates netrin-1-induced Ca2+ elevation in growth cones
Netrin-1 is known to guide axonal growth cone through a Ca2+-dependent pathway [1, 18] and netrin-1-induced increase in [Ca2+]i in growth cones requires both intracellular Ca2+ release and Ca2+ influx through channels on the plasma membrane [19–21]. Consistent with previous studies [21–23], bath application of netrin-1 (10 ng/ml final concentration) induced a significant rise in [Ca2+]i in Xenopus growth cones (Figure 2E). Importantly, overexpression of XSTIM1-DN abolished the sustained Ca2+ elevation within neuronal growth cones in response to netrin-1 (Figure 2E). Previous studies from ours and others have shown that TRPC1 is required for netrin-1-induced sustained Ca2+ elevation [21, 23]. We have observed an association of TRPC1 with STIM1 in Xenopus brain lysates (Additional file 2: Figure S2), similar to what has been shown in mammalian cells [2, 16, 24]. Therefore, netrin-1 may activate STIM1-dependent SOCE through TRPC1 in neuronal growth cones.
STIM1-dependent SOCE generates filopodial Ca2+ entries in Xenopus neuronal growth cones
Localized Ca2+ transients in filopodia play an important role in filopodial motility and growth cone responses to extracellular cues . We thus examined the potential role for SOCE in Ca2+ entry in growth cone filopodia. Here we used a membrane tethered calcium indicator Lck-GCaMP3  to reliably monitor Ca2+ influx through the plasma membrane. Using a similar protocol as in Figure 2B-D, we measured both the incidence and frequency of fast Ca2+ entries in filopodia by high-speed (30 frames/sec) wide-field fluorescent imaging. We found that store Ca2+ depletion and re-addition of external Ca2+ experiment led to Ca2+ entries in about 25% filopodia (Figure 3; Additional file 3: Movie 1). High frequency time-lapse traces of the integrated intensity of the Lck-GCaMP3 fluorescence and a kymograph representation clearly demonstrated that filopodial Ca2+ entries are independent of growth cone Ca2+ transients (Figure 3A-C; Additional file 3: Movie 1). Importantly, both the incidence and frequency of these filopodial Ca2+ entries were largely abolished by inhibition of XSTIM1 with XSTIM1-DN overexpression (Figure 3D and E; Additional file 4: Movie 2) or TRPC1 knockdown by XTRPC1-MO (Figure 3D and E; Additional file 5: Movie 3). These results thus indicate that STIM1- and TRPC1-dependent SOCE is indispensable for filopodial Ca2+ entries within neuronal growth cones.
Previous studies have revealed that Xenopus growth cones exhibit spontaneous filopodial Ca2+ transients that are closely associated with growth cone motility [14, 15, 26]. Using Lck-GCaMP3, we also observed robust periodic, spontaneous calcium entries in filopodia of Xenopus growth cones in a Modified Ringer solution that contains 1 mM extracellular Ca2+ (Figure 4A; Additional file 6: Movie 4). Importantly, both the incidence and frequency of the entries were also substantially reduced by inhibition of STIM1 and TRPC1 function (Figure 4B and C; Additional file 7: Movie 5 and Additional file 8: Movie 6), suggesting that STIM1/TRPC1-dependent SOCE is involved in generating and maintaining oscillatory patterns of spontaneous filopodial Ca2+ transients.
Bath application of netrin-1 (10 ng/ml final concentration) was found to potentiate both the incidence and frequency of filopodial Ca2+ entries of Xenopus spinal growth cones (Figure 4D-F; Additional file 9: Movie 7), consistent with previous study using Fluo-4 . We found that this increase in filopodial Ca2+ entries by netrin-1 was abolished when STIM1 function was inhibited by XSTIM1-DN (Figure 4E and F). Over-expression of morpholino against XTRPC1 (XTRPC1-MO) also compromised the potentiation of filopodial Ca2+ entries by netrin-1 (Figure 4E and F). Therefore, STIM1/TRPC1-dependent SOCE mediates the netrin-1-dependent potentiation of oscillatory filopodial Ca2+ entries in neuronal growth cones.
The membrane tethered calcium indicator lck-GCaMP3 also provides an opportunity to map the entry sites of Ca2+ in filopodia. We thus analyzed the sites of initial filopodial Ca2+ entry in Xenopus growth cones by kymography analysis. We found that, although the initial sites of Ca2+ entry distributed throughout the length of a filopodium, a large portion of the Ca2+ entry sites (42-59%) were found at the filopodial tip (Figure 4G). When filopodial Ca2+ entries under different conditions (store-operated, spontaneous, and netrin-1-induced) were examined, no difference was seen on the location of Ca2+ entry sites in filopodia (Figure 4G). Therefore, the tip of the filopodia appears to be the primary site of SOCE-mediated Ca2+ entry in nerve growth cones.
STIM1 proteins reside predominantly in the ER, and undergo rapid and reversible translocation into ER-plasma membrane junctions to interact with and activate SOC channels following store depletion in non-excitable cells . Live cell imaging of Xenopus neurons expressing YFP tagged STIM1 showed that YFP-XSTIM1-WT appeared to translocate into filopodia after store Ca2+ depletion, as revealed by pseudocolored images and phase overlay images with mCherry (Figure 5; Additional file 10: Movie 8). Together with the presence of STIM1 in Xenopus growth cones and their filopodia by immunostaining (Figure 1D), these results suggest an intriguing possibility that STIM1 proteins may become spatially reorganized into growth cone filopodia after activation by store-depletion to further activate SOC channels that may include TRPC1.
XSTIM1 is required for growth cone guidance
To test whether STIM1-dependent SOCE is required for growth cone guidance in response to netrin-1, we employed a well-established in vitro growth cone turning assay [19, 20, 23, 28]. Previous studies have shown that netrin-1, a classical guidance cue, induces growth cone turning responses that are mediated by Ca2+ from both extracellular and intracellular sources [19–21, 29]. In a microscopic gradient of netrin-1 (5 μg/ml in the pipette, ~5 ng/ml reaching the growth cone), Xenopus growth cones of overnight culture (12-20 hrs) without laminin coating exhibited robust chemoattractive turning within 30 minutes (Figure 6A). Importantly, expression of XSTIM1-DN or XSTIM1-CA in Xenopus spinal neurons completely abolished netrin-1-induced attraction, and interestingly resulted in repulsion (Figure 6A and B). Expression of wild-type STIM1 (WT) produced no effect on netrin-1-induced attractive turning (Figure 6A and B). Overexpression of the dominant negative human STIM1 (hSTIM1-DN)  also eliminated netrin-1-induced attraction and converted it to repulsion (Figure 6B). The neurite extension rate in a netrin-1 gradient was not significantly different under these conditions , except XSTIM1-CA which slightly reduced the growth rate (Figure 6C). Thus, proper function of XSTIM1 is essential for netrin-1-induced growth cone turning responses of Xenopus spinal neurons in vitro. Together with the previous studies showing that TRPC1 knockdown abolished the netrin-1-induced attractive growth cone turning responses [20, 21], the results indicate that STIM1/TRPC1-dependent SOCE may play a critical role in growth cone guidance.
To assess whether STIM1 is required for axon guidance in vivo, we examined the midline axon guidance of commissural interneurons in the developing Xenopus spinal cord, which is known to require netrin-1 signaling [20, 23]. Commissural interneuron axons in developing Xenopus embryos were specifically identified with the 3A10 monoclonal antibody . In stage 25-26 embryos, 3A10-positive commissural axons extend toward and across the midline in a highly organized manner (Figure 7A and B). In contrast, a significant percentage of commissural axons derived from YFP-XSTIM1-DN injected embryos wondered around and failed to cross the midline with some even went out of the spinal cord (Figure 7C). For simplicity, we scored both types of guidance defects as the one not crossing and presented and quantified the percentage of crossed axons (Figure 7F). XSTIM1-DN markedly reduced the percentage of crossed axons to about 50% of the control groups (uninjected and GFP injection only) and the WT group. Similarly, over-expression of YFP-XSTIM-CA, but not YFP-XSTIM1-WT, also led to significant midline guidance defects (Figure 7D and F). On the other hand, none of these molecular manipulations significantly affected the numbers of commissural neurons in the developing Xenopus spinal cord (Figure 7G). Taken together, these results demonstrated that STIM1 is requried for the midline axon guidance of commissural interneurons in the developing Xenopus spinal cord in vivo.
Ca2+ is a key second messenger that mediates a wide range of neuronal activity and responses to extracellular stimuli . Spatiotemporally-restricted Ca2+ signals can steer growth cones in responses to extracellular guidance cues and are thought to be generated from Ca2+ influx through the plasma membrane as well as Ca2+ release from internal store [1, 18]. However, how these two events are coupled to sustain Ca2+ signaling during guidance responses remain unclear. SOCE is believed to be a part of the intracellular Ca2+ homeostasis machinery that maintains [Ca2+]i for various neuronal functions, including optimal growth cone motility. The function of SOCE is well established in non-excitable cells and considered as a Ca2+ entry mechanism for refilling intracellular Ca2+ stores. The molecular components of SOCE include STIM, Orai, and TRP channels, which have also been identified and characterized mostly in non-excitable cells [2, 3]. More recently, several studies support the presence and functional implication of SOCE in the nervous system [4–9], but the molecular composition and functional role of SOCE and STIM1 in neuronal growth cone guidance is not well established. Our data demonstrate that STIM1- and TRPC1-dependent SOCE not only operates in neuronal growth cones but also mediates filopodial Ca2+ transients and growth cone guidance both in vitro and vivo [20, 30, 31]. Our results are consistent with a recent report showing that STIM1 and Orai, two components of SOCE, are involved in growth cone responses to brain derived neurotrophic factor and Semaphorin-3a . Importantly, our study has further identified that TRPC1 is also an essential component of SOCE and a major site of SOCE-mediated Ca2+ entry is in the filopodia, especially at the tip of the filopodia. Moreover, we have presented in vivo evidence that STIM1 is required for proper guidance of commissural axons in developing spinal cord, a classic example of netrin-1-dependent long-range growth cone guidance [20, 30, 31]. Together, the current study has clearly established a role for SOCE, involving STIM1 and TRPC1, in mediating filopodial Ca2+ entries underlying axonal growth cone guidance.
At this moment, the precise mechanism by which STIM1 and SOCE are involved in netrin-1-induced Ca2+ signaling for growth cone attraction remains unclear. Netrin-1 is known to elicit Ca2+ signals by Ca2+ influx through TRPC1 and Ca2+ release from the internal stores to induce growth cone attraction [1, 18–20] but the underlying mechanism remains unclear. It has been shown that brain derived neurotrophic factor (BDNF) triggers Ca2+ release from internal stores through activation of the PLC-γ and IP3 pathway, which in turn induces SOCE through STIM1-TRPC activation [18, 32–34]. Netrin-1 is considered to be in the same group of Ca2+-mediated guidance cues with BDNF. Given that PLC-γ and IP3-induced Ca2+ release are involved in growth cone extension and navigation [22, 34–36], we propose that netrin-1 may initiate intracellular Ca2+ release through activation of netrin-1 receptor Deleted in Colorectal Cancer (DCC), PLC-γ and IP3 production, which further triggers store-depletion, STIM1 activation, and Ca2+ influx through TRPC1 for replenishing ER Ca2+. This notion is further supported by the findings that both netrin-1 and BDNF activate PLC-γ and Phosphatidylinositol 4,5-bisphosphate (PIP2) hydrolysis in neurite elongation [37, 38]. Therefore, our results provide additional evidence for the conserved signaling pathways among Ca2+-mediated guidance cues and between netrin-1 and neurotrophins.
The role of TRPC channels as SOC has been controversial, but multiple lines of evidences support TRPC as a strong candidate component of store-operated Ca2+ channels. For example, TRPC1 has been shown to be bound and activated by STIM1 and contribute to SOCE in some cells [16, 17, 39–41]. We found that STIM1 interacts with TRPC1 in embryonic neural tissues (Additional file 2: Figure S2) and that TRPC1 knockdown inhibits STIM1-mediated SOCE within growth cones and filopodia (Figures 2D, 3D and 3E), suggesting that TRPC1 is an essential component of SOCE. As STIM1 is also required for netrin-1-induced Ca2+ elevation and growth cone attraction which was shown to be mediated by TRPC1, our data support a role for STIM1 in activating TRPC1. However, we cannot rule out the possibility that STIM1 may affect Ca2+ signaling and growth cone guidance by other mechanisms, such as its effects on cAMP signaling or ER remodeling [42, 43]. Recent studies also showed biochemical assembly of STIM1-TRPCs-Orai complex and functional connections between TRPC channels and Orai1 [41, 44, 45]. STIM1-Orai1 co-localization in response to Ca2+ depletion was reported in neuronal growth cones . Therefore, it is possible that Orai also plays a role in netrin-1 signaling and guidance.
It should be noted that Lck-GCaMP3 was successfully used in distinguishing the Ca2+ signals from membrane entry from internal release from the stores [25, 46]. Our data with Lck-GCaMP3 showing the presence of filopodial Ca2+ transients and its potentiation by netrin-1 is consistent with the previous reports using Fluo-4 [14, 15, 26]. However, when compared with previous studies using Fluo-4, the incidence and frequency of filopodial Ca2+ transients observed in our study appear to be lower than those seen in the previous reports. The difference may be attributed to two possibilities. First, Lck-GCaMP3 detects Ca2+ entry events only at near-plasma membrane regions. However, fluo-4 could detect cytosol Ca2+ changes from other sources such as intracellular stores, which will likely be missed by Lck-GCaMP3. In this regard, Lck-GCaMP3 fluorescence Ca2+ signals may be better called “filopodial Ca2+ entries” rather than filopodial Ca2+ transients. Second, we did not count the Ca2+ transients propagated from the growth cone proper and only counted the Ca2+ entry events generated within the filopodium independently of Ca2+ transients from the growth cone proper. Therefore, our data do not contradict the previous work.
It is of interest to see that the initial site of filopodial Ca2+ entry is largely localized to the tip of filopodia. Filopodia are considered to be the sensory apparatus for growth cones as they extend farther distance to detect the environmental signals. Therefore, it makes sense to have the sensory molecules accumulated at the tip for signal transduction initiation. However, the lack of quality antibodies prevented us from convincingly detecting the localization of STIM1/TRPC1 and other SOCE components at the filopodial tip. On the other hand, it has been reported that several receptors such as integrins, TRPC1 and DCC [14, 26, 47] and signaling molecules such as Src, PAK, PKA [48, 49] are enriched at the tip of filopodia along with many other cytoskeleton regulatory molecules [11, 50, 51]. Therefore, it is conceivable that STIM1 and TRPC1 could function at the filopodial tip as an effective way to sense the environment and initiate Ca2+ signaling during growth cone guidance.
We report fast, highly localized and periodic spontaneous filopodial Ca2+ entries initiated independently of growth cone Ca2+ transients, which was consistent with the previous reports of oscillatory pattern of spontaneous Ca2+ transients within growth cone and filopodia during axonal growth [14, 15, 52]. The critical role for TRPC1 in generation of filopodial Ca2+ entry and its potentiation by netrin-1 is also consistent with the previous reports [14, 15, 26]. A further unexpected result was that STIM1-DN mutant blocked not only the SOCE-induced filopodial Ca2+ entries that depend on STIM1 but also spontaneous and netrin-1-potentiated oscillatory filopodial Ca2+ entries, suggesting that STIM1-dependent SOCE mediates the generation and maintenance of filopodial Ca2+ entries. Thus, our visualization of oscillatory patterns of spontaneous filopodial Ca2+ entries and their inhibition by STIM1- or TRPC1-knockdown is the first demonstration of a role of STIM/TRPC1-dependent SOCE in regulating Ca2+ oscillation in neurons, which is consistent with previous findings in other cell types [53–55]. It is plausible that store Ca2+ release, transient drop in ER Ca2+, and Ca2+ entry through TRPC1 triggered by transient STIM1 activation may underlie the Ca2+ oscillations seen in growth cone filopodia. Thus, considering the functional correlation between the frequency of filopodial Ca2+ transients and growth cone outgrowth and turning [14, 26], disruption of STIM1 or TRPC1 function is likely to result in the breakup of Ca2+ cycling for oscillations and subsequent attenuated frequency of filopodial Ca2+ entries, which may further cause the suppression of growth cone guidance in response to netrin-1.
Our data demonstrate a role for STIM1/TRPC1-dependent SOCE in mediating oscillatory patterns of spontaneous and netrin-1-potentiated filopodial Ca2+ entries that underlie axonal growth cone guidance both in vitro and in vivo.
Xenopus STIM1 (XSTIM1) [GenBank: BC126011] was identified by BLAST searches of the GenBank database using human STIM1 cDNA sequence. The coding region of XSTIM1 gene was isolated by RT-PCR, sequenced and cloned into the pCS2 vector (gift of D. Turner, University of Michigan). The following constructs of XSTIM1 and its mutants were generated by site-directed mutagenesis (Strategene) or by PCR based on previous studies of mammalian STIM1 mutants : YFP-XSTIM1-WT, YFP-XSTIM1-DN, YFP-XSTIM1-CA, and mCherry-XSTIM1-DN (Figure 2A). Different XSTIM constructs were in vitro transcribed with the mMESSAGE mMACHINE SP6 kit (Ambion). pN1-Lck-GCaMP3 plasmid was obtained from Addgene (plasmid #26974, ), cloned into pCS2 vector using BamHI and XbaI sites and in vitro transcribed with mMESSAGE mMACHINE SP6 kit (Ambion).
Xenopus embryo injection and spinal neuron culture
Blastomere injections of mRNAs or morpholinos into early stages of Xenopus embryos and culturing of spinal neurons from these injected embryos were performed as previously described [20, 23, 29, 56]. Briefly, fertilized embryos were injected at the two- or four-cell stage with mRNA (2-3 ng/embryo). A control morpholinos or morpholinos specific for Xenopus TRPC1 (XTRPC1-MO) was previously described . Uninjected or injected embryos at stage 22 were used for cultures of spinal neurons as previous described [20, 23]. All the procedures involving Xenopus frogs and embryos were carried out in accordance to the NIH guideline for animal use and have been approved by the Institutional Animal Care and Use Committee (IACUC) of Emory University.
RT-PCR and Whole-mount in situ hybridization of Xenopus embryos
Neural tube and notochord were isolated from the dorsal section of the stage 25-26 Xenopus embryos after dissection with microsurgical scissors and incubation with collagenase (type I, Sigma). Total RNA was prepared by using TRIzol Reagent (invitrogen) and treated with the RNase-free DNAse I (Roche) to remove genomic DNA. The extracted RNA was reverse transcribed by using M-MLV reverse transcriptase (Invitrogen) and random hexamers (Roche). PCR amplification was performed using Taq polymerase (Fermentas). The –RT lane is the negative control of the RT-PCR on neural tube tissue RNA in the absence of a reverese transcriptase. The PCR primers are as follows; XSTIM1-forward, 5′ CCAGAACCTTGGAAGAGGTG 3′, XSTIM1-reverse, 5′ GACTGAATGGTACCGGCTGT 3′; XODC-forward, 5′ CAGCTAGCTGTGGTGTGG 3′, XODC-rev, 5′ CAACATGGAAACTCACACC 3′. For whole-mount in situ hybridization, the digoxigenin (DIG)-UTP-labelled antisense RNA was used as previously described [23, 57]. The C-terminal region of XSTIM1 corresponding to amino acid 192-668 was used for the specific anti-sense and sense probes. The labelled probe was detected with alkaline phosphatase-conjugated anti-DIG antibody (Fab fragments) and visualized with the BM purple AP substrate (Roche Applied Science). Selected embryos from whole-mount in situ hybridization were embedded in a sucrose and Tissue-Tek O.C.T medium, completely frozen and cross-sectioned at 40 μm with a cryostat (Leica CM1850).
Xenopus spinal neuron cultures were fixed in 4% paraformaldehyde in a cacodylate buffer (0.1 M sodium cacodylate, 0.1 M sucrose, pH 7.4) for 30 minutes and permeabilized with Triton X-100 (0.1%) for 10 minutes. The cells were incubated with a rabbit polyclonal antibody against full length human STIM1 (MyBioScource) at a dilution of 1:50 after blocking with 5% goat serum and labelled with Alexa Fluor 546 goat anti-rabbit secondary (Invitrogen). Fluorescent imaging was captured on an inverted microscope (Nikon Eclipse Ti-E).
Growth cone turning assay
Microscopic gradients of netrin-1 (5 μg/ml in the pipette) were produced as previously described [29, 56, 58, 59]. Xenopus spinal neurons derived from injected blastomeres were identified under fluorescent microscope and used for turning assay at the room temperature 14 to 20 hrs after plating as previously described [20, 23, 29, 56]. The culture was plated on glass coverslip without any coating. The turning angle was defined by the angle between the original direction of neurite extension and a straight line connecting the positions of the center of the growth cone at the onset and the end of the 30 min period. The rates of neurite extension were calculated based on the net neurite extension during the turning assay. Only those growth cones of isolated neurons with a net neurite extension > 5 μm over the 30-min period were included for analysis. Statistical significance was assessed using the Bootstrap-test.
Ca2+ imaging of cultured Xenopus spinal neurons
Ca2+ imaging of cultured growth cones of Xenopus spinal neurons was performed as previously described [23, 29, 56]. Specifically, isolated Xenopus spinal neurons were cultured on glass coverslip without coating, loaded with Fluo-4 AM (2 μM, Molecular Probes) for 30 minutes, rinsed with the Modified Ringer used for growth cone turning assay, and imaged after bath-application of netrin-1 (10 ng/ml). For store-operated Ca2+ entry experiment, neurons were bathed in Ca2+ -free media with CPA (25 μM) to deplete intracellular Ca2+ stores, and imaged after re-addition of extracellular Ca2+ (1.5 mM). Growth cones expressing mCherry-XSTIM1-DN proteins were identified under fluorescent microscope and selected for further Ca2+ imaging. Imaging was carried out using a Zeiss 510 META system equipped with a 20X objective (NA 0.8). Excitation was at 488 nm by argon laser and the emitted fluorescence was collected at 500-560 nm. Fluorescence and bright-field images were simultaneously acquired at every 30 seconds with a frame scan. The mean fluorescence intensity of each time point was measured over a fixed circular region of interest that covers the entire growth cone and normalized to the average fluorescence intensity that was measured during a 2 minutes baseline period (prior to the netrin-1 application or addition of 1.5 mM Ca2+ solution).
For filopodial Ca2+ imaging, Lck-GCaMP3 mRNA was injected into early staged embryos without or with other mRNAs or morpholino. Spinal neurons were cultured on the glass coverslip coated with poly-D-lysine and laminin, which increases the number and length of filopodia , in serum-free culture medium. In our netrin-1-induced filopodial Ca2+ entries experiments, the spinal neurons were incubated in MR solution with the addition of cAMP analog Sp-cAMP (25 μM) to counterbalance the laminin’s effect of reducing cAMP levels in growth cones  and mimic the condition of our in vitro turning assay where laminin coating on the glass culture dish was omitted. Live cell imaging of Ca2+ transients was performed on an inverted microscope (Nikon Eclipse Ti-E) equipped with a 60X Apo TIRF objective (NA 1.49), and EMCCD camera (Photometrics) using NIS-Elements software (Nikon). Excitation was at 488 nm and the emitted fluorescence was collected at 520 nm and Lck-GCaMP3 fluorescence images were acquired at every 200 milliseconds. To determine several characteristics of filopodial Ca2+ entries, including the incidence, frequency and initiation sites of transients, the Kymographs (spatio-temporal map) were created from the images of the user-defined segmented line one pixel in width spanning the filopodium from the time-lapse movies with NIH ImageJ software. Grayscale values for this linear region of interest (ROI) for each frame of the time series were transformed into pseudocolored images to show time-dependent changes in intracellular Ca2+ concentration ([Ca2+]i) along the length of the ROI (y-axis) over time (x-axis).
Immunoprecipitation and immunoblotting
For co-immunoprecipitation, protein lysates were prepared from the Xenopus brain explants including spinal cords dissected from the embryos at stage 26-28 using lysis buffer containing 1% Triton X-100, 150 mM NaCl, 10 mM Tris-Cl (pH 7.4), 1 mM EDTA, 1 mM EGTA, 0.5% Nonidet P-40, 0.2 mM Na-orthovanadate, and protease inhibitor cocktail. They were incubated with the appropriate antibody for 3-4 hours at 4°C, followed by incubation with protein A/G agarose beads (Pierce) for overnight at 4°C. Mouse anti-c-Myc monoclonal antibody (Roche Applied Science) and rabbit anti-GFP polyclonal antibody (Abcam) were used for immunoprecipitation and immunoblotting.
Embryos at stage 25-26 were fixed and processed for immunocytochemistry as previously described [20, 23, 62]. Monoclonal antibody 3A10, specific for commissural interneurons [23, 63], was obtained from the Developmental Studies Hybridoma Bank at the University of Iowa and used at a dilution of 1:100. Secondary antibodies were used at a dilution of 1:250. Confocal images of sagittal views of embryos were taken with a Zeiss LSM 510 META system and Z-series reconstructions were processed with the Zeiss LSM image acquisition program as previously described . Statistical significance was assessed using the Bootstrap-test.
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We thank P.F. Worley for help and discussion. This work was supported in part by grants from National Institutes of Health to JQZ (GM083889 and GM084363) and to GLM. (NS048271 and HD069184).
The authors declare that they have no competing interests.
SS designed and performed all the experiments, and wrote the manuscript. JQZ oversaw the project, designed some of the experiments, and revised the manuscript with SS. GLM provided guidance to the project and contributed to the writing of the manuscript. All authors read and approved the final manuscript.
Electronic supplementary material
Additional file 1: Figure S1: Alignment of STIM1 amino acid sequences of Xenopus laevis, Xenopus tropicalis and human. Identical amino acid residues are highlighted in dark. Dashes indicate gaps inserted for maximal alignment score. The red box indicates the amino acid (D65, within the EF hand motif) that was mutated in the dominant negative form of XSTIM1. (PDF 144 KB)
Additional file 3: Filopodial Ca2+ entries are generated by SOCE. A pseudocolored Lck-GCaMP3 fluorescent Ca2+ images of Xenopus neuronal growth cones were captured at 200 milliseconds intervals over 7 min period of the store-depletion and re-addition of extracellular Ca2+ as shown in Figure 4A. (MP4 2 MB)
Additional file 4: SOCE-induced filopodial Ca2+ entries are abolished by inhibition of XSTIM1 with XSTIM1-DN overexpression. A pseudocolored Lck-GCaMP3 fluorescent Ca2+ images of Xenopus neuronal growth cones expressing XSTIM1-DN were captured at 200 milliseconds intervals over 7 min period of the store-depletion and re-addition of extracellular Ca2+. (MP4 2 MB)
Additional file 5: SOCE-induced filopodial Ca2+ entries are attenuated by inhibition of XTRPC1 with XTRPC1-MO overexpression. A pseudocolored Lck-GCaMP3 fluorescent Ca2+ images of Xenopus neuronal growth cones expressing XTRPC1-MO were captured at 200 milliseconds intervals over 7 min period of the store-depletion and re-addition of extracellular Ca2+. (MP4 2 MB)
Additional file 6: Oscillatory spontaneous filopodial Ca2+ entries. A pseudocolored Lck-GCaMP3 fluorescent Ca2+ images of Xenopus neuronal growth cones were captured at 200 milliseconds intervals over 7 min period in Modified Ringer solutions (1 mM extracellular Ca2+) as shown in Figure 5A. (MP4 2 MB)
Additional file 7: Spontaneous filopodial Ca2+ entries are abolished by inhibition of XSTIM1 with XSTIM1-DN overexpression. A pseudocolored Lck-GCaMP3 fluorescent Ca2+ images of Xenopus neuronal growth cones expressing XSTIM1-DN were captured at 200 milliseconds intervals over 7 min period in Modified Ringer solutions. (MP4 2 MB)
Additional file 8: Spontaneous filopodial Ca2+ entries are abolished by inhibition of XTRPC1 with XTRPC1-MO overexpression. A pseudocolored Lck-GCaMP3 fluorescent Ca2+ images of Xenopus neuronal growth cones expressing XTRPC1-MO were captured at 200 milliseconds intervals over 7 min period in Modified Ringer solutions. (MP4 2 MB)
Additional file 9: Netrin-1-potentiated filopodial Ca2+ entries. A pseudocolored Lck-GCaMP3 fluorescent Ca2+ images of Xenopus neuronal growth cone were captured at 200 milliseconds intervals in Modified Ringer solution (1 mM extracellular Ca2+) with Sp-cAMP (25 μM) before and after bath application of netrin-1 (10 ng/ml) as shown in Figure 4D. (MP4 4 MB)
Additional file 10: Dynamic translocation of STIM1 into neuronal filopodia in response to store-depletion. Time-lapse fluorescent images of Xenopus neuronal growth cone expressing YFP-XSTIM1 before (1 mM Ca2+) and after store Ca2+ depletion (0 mM Ca2+/CPA). Images were captured at 2 seconds intervals. (MP4 317 KB)
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Shim, S., Zheng, J.Q. & Ming, Gl. A critical role for STIM1 in filopodial calcium entry and axon guidance. Mol Brain 6, 51 (2013). https://doi.org/10.1186/1756-6606-6-51
- Axon guidance
- Filopodial Ca2+ entry
- Ca2+ oscillation
- Calcium homeostasis